FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60451668
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTTGCACAGCAAGC2150800.35578836302746847No Hit
GGGGGGGGGGGGGGGG1900590.31439827268289766No Hit
CCGATTCACAATCCGT1809980.2994094389587397No Hit
TAGAGAAACGATCCAT1792120.2964550126226459No Hit
CAAGGGTGATGGGCAA1789020.2959422062597181No Hit
AGGTTACTGTTCTGGA1588250.26273055029680903No Hit
TTCCCATCTCTAACGT1574860.26051555765177564No Hit
CCCATTTCTGCGGTAA1480780.24495271164395332No Hit
AGCCGGTACCTCGAGC1445100.23905047582806152No Hit
TTGTTTGACACCTGCG1442150.23856248267624308No Hit
CTGGTGGTGGGGTTCC1439340.23809764852146015No Hit
CTACATTACTTCTCGC1428000.2362217697615887No Hit
CTCTTTCTGTAACGAA1421290.23511179211796107No Hit
GTCCGAGTGTGATGAA1375340.22751067844811163No Hit
TTCAAGTCTGTACACT1362220.2253403495830752No Hit
AACACTCGACCACAAT1333480.22058613833451213No Hit
ACTGATTCTGGCATTT1332990.22050508184488804No Hit
CTGGTGGTGTTCCATT1267310.20964020380711415No Hit
AGGAGGTTGAGGCATG1265710.2093755295552804No Hit
ATATGCCGAGTGAGCA1254160.2074649122998558No Hit
GTACCCTTGGGCCAAA1185800.1961567048902604No Hit
GAATCAGCTGTTGTCA1182000.19552810354215538No Hit
AAACGAAACTAAGCAA1181750.19548674819030634No Hit
GGTCTAAACGCTACGC1166150.19290617423492765No Hit
CCTCCCTTGCCTCGTT1163680.19249758335865935No Hit
ACAGCGGCTCGTTATG1147440.18981113970254715No Hit
ACCTCGTTGAATACAG1144810.1893760814010955No Hit
TGGTAAGCTCTGCGGT1140290.18862837663966525No Hit
TAATAGGGACGCAACC1125330.18615367238502004No Hit
GGGCTTCGAGTCCCAG1096090.18131675043275897No Hit
TGGCGTTCTGCTTTGA1090420.18037881105282322No Hit
CTGCTTTCTCCATGTA1056710.17480245540950168No Hit
GTCTACCACTCATGCA1052270.17406798436066315No Hit
CGCGATCGATTTGGGT1050680.17380496432290338No Hit
CAGATTTCTAGGGCTA1049410.1735948791355104No Hit
GGATGCCTGCCTTCCA1035940.1713666527778853No Hit
CGACGACACACGAGCA1017350.16829146881439236No Hit
CAGTGTAACAGCGCTC1013850.1677124938885061No Hit
CACTTAGGAGAGCCTC1012250.1674478196366724No Hit
TCAGTCCTGGCACCCA1008950.16690192899226536No Hit
AGTCGAACTAGTCTAC1008340.16680102193375376No Hit
CTAGGGCACTAATCGC994760.16455459922131513No Hit
TCTCTCTACGTACTAC992080.16411126984949365No Hit
AAACGCTACGCTCAGC988970.16359680927249187No Hit
GGCCTTTACAGTCTAC986470.1631832557540017No Hit
CTTTATGTGGAGTAAT980170.16214110088740646No Hit
TGAGCGCACACCGTTA972580.16088555240527028No Hit
TCTACGCTGCGATTGT959920.15879131738763602No Hit
ACCTCGTTGAACTAGA952990.15764494703438126No Hit
ATGCAAAGATGCAAGG946900.1566375306633392No Hit
TCTCTCGGAATCTGTG939320.15538363639527697No Hit
TTCCACTCTACTCGAT934130.15452509929089137No Hit
GCTAGATACGGTATGG923350.15274185651916172No Hit
ACCTATGGAGACCGAA921680.15246560276881027No Hit
TCAGCCGGACAGGCCT921320.1524060510621477No Hit
TTGTAACCTCGATTAC918540.1519461795495866No Hit
CGTTGCTTGAATGCGG913560.1511223809407542No Hit
GCAACTTGATGATCAC907670.15014804885119135No Hit
ATCTGTACTCGTAACT898830.14868572360981008No Hit
AGGACAGACACCATGT894810.14802072955207787No Hit
GTGCAGAGAAACGCAG892930.14770973730617323No Hit
ATTACCTACAACGTAA891500.14747318469359688No Hit
TAGCGTAACTGGTCCG882100.14591822346407382No Hit
TCTCTCTACTGCATCA882040.14590829817963005No Hit
TACCACCTGAACTAGA878590.1453375943241136No Hit
CGCGATCGAGTTAGAA868140.14360894061682467No Hit
TCCGAATGAACTCGAT866960.1434137433560973No Hit
TTACCATTGGCTCCTT855460.1415113971710425No Hit
TGGATCCCTTGAGCAG852380.1410018992362626No Hit
GGAATGGTGGTTCTCC850710.14072564548591115No Hit
CCCTTGCCTCGAGGTA850700.1407239912718372No Hit
AAACGAAACTGCCACG845590.1398786878800433No Hit
TCAGCGCGAAGCCATT836070.1383038760816327No Hit
GTGAGATCTTTTGGGT834980.13812356674757095No Hit
TACTAACCTGGTTTGT832970.13779106971870486No Hit
CGAAATAGATCATTTC831960.13762399409723486No Hit
CAGTATTCTCTTAGTG830410.13736759091577092No Hit
CCTACTGTGCCGCAGT827270.13684816769654726No Hit
CTACCTGTGTGCTGTA813760.13461332448262633No Hit
TCCTGTTCTCTTGTGA811820.13429240695227798No Hit
TTATCGACTAGCCCTG809160.13385238600860444No Hit
CCAAGTTGATCCTACC803350.13289128763163327No Hit
CTTCTAAACTACTTTC799910.13232223799019077No Hit
GTAAACAGACCGCAGT796500.13175815099097016No Hit
GTGGCTGTGTGGCATT793760.13130489633470496No Hit
GCGTGCTGAGCTGAGA791390.13091284759917626No Hit
TCCGGGTGAAACGTAA787710.13030409681995872No Hit
CGTCTTGACTGTGGGA778080.12871108866673456No Hit
CGAAATAGACATGCTA777150.1285572467578562No Hit
ATGCAACTGCGCCACA764460.12645804909800007No Hit
CTACTTTGATCTGTGA762420.1261205894269121No Hit
AGCCGGTACGCCCTTT761700.12600148601358693No Hit
GTCATATCTTTACGAC757950.12538115573585165No Hit
CAATCGCCTACCCGGT756950.1252157343284556No Hit
CACCGTTACAGGTGAC747860.1237120537352253No Hit
ATTTCTGACCCGTGAC746310.12345565055376138No Hit
GCACTTCTGTGTGCTA743360.12296765740194299No Hit
ATCAATCCTATCACAC741770.12270463736418324No Hit
TAGGATAGACGAATCT739040.12225303692199196No Hit
CCCGGAAACAAGACAT737050.12192384832127377No Hit
GCTGACCGAGCTGAGA735950.1217418847731381No Hit
GCATGATACGCAGGAT734390.12148382737760023No Hit
AGCGCTCGAAAATCGA731490.12100410529615163No Hit
GTCATATCTAGTCTGT730940.12091312352208378No Hit
GAAGGACACGTTTACG730360.12081717910579408No Hit
TCCGTAAGAGCACGCT726900.12024482103620367No Hit
GTACCGGACGAAATCA720460.11917950717257297No Hit
GGGAACCCTGCACTTA719220.11897438462740184No Hit
TCTACGCACTTTGTCT717780.1187361778007515No Hit
AGGCGATGATTCGCAA717080.11862038281557426No Hit
GGTTCACCTGTCCCAG714900.11825976414745082No Hit
CGCACTTACACCAGTT714280.11815720287486527No Hit
CATGCAAACTCAGGTT711510.11769898557637815No Hit
TGGTCCTTGGCTTACA706580.11688345803791553No Hit
TTCACGCTGCGTACAT706000.1167875136216258No Hit
AAATGCCTGTTGACAC705430.11669322341941003No Hit
CATTCTATGTACCAAC702320.11617876284240826No Hit
TTTCTCGCTCCCGCAA701970.11612086534981962No Hit
CAGGCTTCTACTCGAT700590.11589258380761305No Hit
GAGGTCCTGGTTTACG697360.11535827266172376No Hit
GTCTAATCTCGACAAG696730.1152540571750642No Hit
AAGTGGCGAACTCGAT693570.11473132552769263No Hit
ACGGCTTCTAGGACCA691910.11445672599141515No Hit
AATCTGCGAGACTGTT685140.11333682306334375No Hit
CCAGGACTGCGATTCA683540.11307214881151005No Hit
GGGTTGCTGTCAGGTT681910.11280251191745445No Hit
GTTCCTGTGGTTCTCC678580.11225165863082555No Hit
TGCCAAATGAACTAGA675740.1117818618338207No Hit
TCCGAGCGATGAACAA675320.11171238484271434No Hit
AACGTCCCTGAACCTT671460.11107385821016551No Hit
TGTCATGGATCTGGGC670310.11088362359166003No Hit
AACAGCTACCCAGCTG670210.11086708145092042No Hit
CCTGTTGACAACGTAA666410.11023848010281537No Hit
GCTATGATGATCAGGG662220.10954536440582582No Hit
TCTTCAAACGACTGTT660240.10921783001918162No Hit
CAAACCATGGATAGCG655450.10842546147775442No Hit
TCGTATGGAACGTAAA652460.10793085146964018No Hit
TCGACTAGAGCTACGC651570.10778362641705767No Hit
CCCACCTCTCTGGGTC651420.10775881320594827No Hit
AGCTCTGCTACACCGC650690.10763805557854912No Hit
TAGTGCTGAGCAGGAT649290.10740646560819464No Hit
GCGTGCTGACTGAGAG647070.10703923008377535No Hit
AGCGCAAGAGAATTGA644930.10668522827194776No Hit
ATCGCCGGACGTTATG642520.10628656268012324No Hit
GGTTTAGTGCCTTTGC641320.10608805699124796No Hit
ATCGAGTTGTATTGCG638080.10555209163128469No Hit
AAGCGCCACGGTTGAG637880.10551900734980547No Hit
TCAAGCAACCTGCCAG637790.10550411942313982No Hit
TTACACACTTACCTGA636020.10521132353204879No Hit
TGGGTTTGACAGACCC634290.10492514449725358No Hit
TCAGGAGGACGCCACA634170.10490529392836603No Hit
CAAGGCCACATTGCCA631280.1044272260609914No Hit
ATTACCTACCCTTCCA630640.10432135636025792No Hit
ATGGCTATGGTTAGAA630570.10430977686174019No Hit
TGTTTGTTGAACGTGG630070.10422706615804216No Hit
AAAGCCTTGACCAGTT629820.10418571080619314No Hit
CAAGAATGAGGCCTGT628440.10395742926398656No Hit
TACCGACCTCAAGGTG626390.10361831537882463No Hit
GGACTTAACAGCCTAT625480.1034677818980942No Hit
CACTCTGACAGTACGG624650.10333048212995545No Hit
CAAGATAGAGGACTGA623640.10316340650848542No Hit
GGGATCAGAACCATGT622470.10296986346183203No Hit
TCCATTTGACTCATTT620280.10260759057963463No Hit
CGAAATAGATTCGCAA619720.10251495459149282No Hit
GTAAAGCCTTTGACCA618400.10229659833373No Hit
TCAAAGGCTGCCCTGA616460.10197568080338164No Hit
GGTTCACCTTTCTGAG615280.10178048354265429No Hit
CTTCCACGAGGAGTCA614850.10170935233747395No Hit
CACGATTGATACAGAA613640.10150919243452472No Hit
TGTACCAGAGAATAAC612460.10131399517379736No Hit
CTGTCGTTGACCTAGT610820.1010427040656678No Hit
CTATGTTACAATGCTC610630.10101127399826254No Hit
CGTGCAGACCACCTAA608490.10065727218643496No Hit
GCGTAAGGATTTCGCC608200.10060929997829009No Hit
AGATGTAGAGAATAAC605610.10018085853313427No Hit
CTGAGCGTGCGAGGAT604820.10005017562129137No Hit
ATAGGCGGATGGCATT604610.10001543712573821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)