FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences160764238
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAAACCTCGTTCTC5047780.31398649741990503No Hit
GGGGGGGGGGGGGGGG4711200.2930502491480724No Hit
ATGATGCACAACCAAA4455290.2771319079060357No Hit
CTCAATTTGAGCCTAT4056050.2522980266295294No Hit
CGTGTACCTAGCCCTG3933540.24467755073737232No Hit
TACGTGAACATGTGGG3727870.23188428262260666No Hit
AGTCCTGCTCATGCGC3701420.23023901621702708No Hit
CGAGTTAACATAGCAA3610280.22456984494275398No Hit
CTACCTCGAAGGCATG3597550.22377800216986068No Hit
CAATCAGACGTGGTGA3269370.20336425816293796No Hit
TCGTAATCTCGGTTGC3250320.20217929313358857No Hit
TATCACTACATCCTTT3180210.19781824860825079No Hit
CCGTTTGTGTCCAGCG3141500.1954103747874574No Hit
AACAGCTACCCAAACT3106450.1932301635392319No Hit
TGGACGCACCGGTACC2970850.18479545183425683No Hit
CGTTCTCGATAGCGAG2853680.17750713936764967No Hit
AGGAACCGACCAGCAC2774020.17255205725542022No Hit
CCTAACGCTAAATCGA2752110.17118919196444674No Hit
TTGTCAACTAGCCCTG2719130.16913774069578832No Hit
TCGACTCACCTCGAGC2703600.1681717298345917No Hit
AGTTTCTTGAATGCGG2696660.16774004178715418No Hit
CGTGTAATGACGTAAA2529580.15734718314654034No Hit
TATGTACCTCCAACGC2521500.15684458380600788No Hit
TTTGACGGATGCTCAA2515790.15648940531164648No Hit
CGTGTCTTGTAATAGG2481950.1543844595587235No Hit
TCTACTAACGATTAAG2481570.1543608224610252No Hit
GTTCCTGTGGCCCAAC2435110.15147087625296368No Hit
AGGTATAGAAGTTGAA2432580.15131350294460388No Hit
CTAGTGCCTCGACAAG2425720.15088679112826076No Hit
GCTTACCACAATGCTC2391700.14877064885537541No Hit
CACATCCTGTCATGTG2313400.1439001626717504No Hit
CGCAATCCTCCTGTGG2308890.14361962764380473No Hit
CACTTTATGATCTGTG2284950.14213049048881132No Hit
TGCGACGACGCGCTGT2177800.13546545096677534No Hit
CGATACAACACGTGCC2176010.13535410779603857No Hit
CTTAGGCCTGCACGCT2158060.13423756594423691No Hit
TCAGGAGGATGCTACA2147490.1335800814108919No Hit
GTGTAACTGCCTGTGG2145360.133447589258004No Hit
AACAGCTACTCTGTAG2131000.1325543557765627No Hit
TCGACTCACTCGCAGC2121910.1319889315184637No Hit
CGATACCCTTCAATGC2078070.12926195687874314No Hit
CACCCATACCCACAAT2016260.12541719632944737No Hit
GTTTGAGACACAACAA2009330.12498613031089661No Hit
GTCTCGTACAACCCGC1986990.12359651777779086No Hit
TCCCACATGACGAGCA1967810.1224034663729131No Hit
AGGCGATGACGAATCT1948050.1211743372926011No Hit
TTTGCGGCTAGTCTGT1946970.12110715817282697No Hit
GGCAGTAGAAGCCCTG1931790.12016291832266826No Hit
GGTTGAACTCCCGAGT1921490.11952222856926675No Hit
GAAGCAGTGGAAATCA1916730.11922614281915112No Hit
CCCTGAACTTCGAGAG1913960.11905384081750817No Hit
AGCTCTGCTAGGACCA1906280.11857612263244766No Hit
TCCGTAAGACGATCGC1906160.11856865828580607No Hit
GTTTGAGACTGAGGCA1897130.11800696620102785No Hit
ACCTCCAACATCATGC1877800.11680458436284817No Hit
AGCCAATTGAATCTGC1863380.11590761870808605No Hit
GAGATCACTGCTGAGA1859800.11568493236661254No Hit
GTTCTCGACTAACGAA1844040.11470461484101954No Hit
CCCTTGCCTATCCTCC1825530.11355323937155726No Hit
CTTGCTGACCCGATTA1810600.11262455024356847No Hit
CATATCACTAATCCGT1801120.11203486685888438No Hit
TGTTATCACTGAGTAA1800880.11201993816560123No Hit
GCCGAACTGTGATGAA1796050.111719498213278No Hit
CGCACACGATAACGAA1795540.11168777474005133No Hit
GAGAGAAGATAACCCA1791980.1114663324563514No Hit
AGATATGGAACCTGCG1790590.11137987044108653No Hit
CAAAGACCTTGTGCTA1764360.1097482886710165No Hit
GCATCTCTGGAACCTT1762960.10966120462686485No Hit
TATTCAGCTTGCTCAA1760880.10953182261841095No Hit
CCCGAGTGACAGATTC1758740.10939870843663627No Hit
AAACAACGATGGAACG1751210.10893032068487768No Hit
CCCTTGCCTCGGTACC1733740.10784363621964234No Hit
TTGATTCACCGAAGCA1726820.10741319222997842No Hit
GTTATCACTCAGGCCT1714480.1066456085836702No Hit
TGCCGTTACCATCCTC1705750.10610257736549593No Hit
AATCTCTTGTCGTACA1697260.10557447484060478No Hit
CCTACGTTGAGCCCTG1688930.10505632477790242No Hit
GTTTCCCGACTGTGCG1687260.1049524459538072No Hit
CGTATCGCTAAATGCA1669630.10385580902638308No Hit
GTGTTGTGAGCTAGAG1665920.1036250363093812No Hit
GTTAATCCTAAACTGA1665590.10360450935611688No Hit
GCAACTTGAAGGTGCA1658020.1031336334888111No Hit
CCTTCTTTGACAACAA1655090.10295137902497943No Hit
GGAGTTACTGGTGTCC1654300.10290223874292243No Hit
CTCAATTTGGGCAGTA1649410.1025980666172784No Hit
ACCTCCAACAGATTCC1640180.10202393395476424No Hit
CGTTACCTGCTCATTT1636060.10176765805340364No Hit
GTTTCAGGAGCGGTAA1634880.10169425864476153No Hit
CGATCAAACAATCCAC1631140.10146161984109923No Hit
CCCGACAGACAGACCC1627300.10122276074856897No Hit
ATGGACTACCATCTTT1621620.10086944834086795No Hit
ACTGTGATGAGTGGTG1620080.10077365589230111No Hit
CGACCTTACACAGGCA1619290.10072451561024412No Hit
GGACACAGATGGGCCT1617000.10058207099516746No Hit
TTCTATGACGCCCTGA1616430.10054661534862001No Hit
TAGGGTTTGAACCCGC1615620.1004962310087894No Hit
TACTGTACTATCTGTG1614090.10040106058910939No Hit
CCCACCTCTGGATGGT1612790.1003201968338257No Hit
CTGGGACACATCCTCC1610940.10020512148976814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)