FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166623023
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTACTC4855630829.141415829431928No Hit
GGAACTCT3925541023.55941531561338No Hit
CTTGGAGA3854024623.13020452161644No Hit
TCCCTGAG2258367213.553752412714298No Hit
TCCCGGAG142472528.550590274670505No Hit
GGACCTCT7130580.4279468630214446No Hit
GCCCTGAG2821490.16933374207236657No Hit
AAGTACTA2167470.13008226360171127No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)