FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences167734983
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTACTC4895277729.18459591700081No Hit
GGAACTCT3952693023.565108060970203No Hit
CTTGGAGA3885919523.16701877270289No Hit
TCCCTGAG2312607513.787270005565864No Hit
TCCCGGAG140194408.35808949883758No Hit
GGACCTCT6677380.3980910768029827No Hit
GCCCTGAG2616830.15600979313897806No Hit
AAGTACTA2027680.12088593349665168No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)