FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006206516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69619470
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGACTTC1802144325.88563658987924No Hit
AGTCTCAG1742650425.031078231420032No Hit
GCCGAAGT1709739824.55835702282709No Hit
CAATGGCA1607321323.087238383170686No Hit
TTGACTTA1056240.15171617939636714No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)