FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences223412425
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCCCAACACCGTGC11101190.4968922386478729No Hit
TCTATGGGAGCTCTTC9126990.40852651771717713No Hit
AGCAACTTGCGTTAGT8091400.3621732318603139No Hit
ACAAGACCTTGCGTGC7753680.3470567941778529No Hit
AGAGGGACTCCTAGGC7099270.3177652272473207No Hit
GTTTGAGACGCATGAG6978110.3123420731859475No Hit
TTGCGTCACTTTCGCC6908160.3092110924448361No Hit
AAACCGTACTGCTCAA6885650.3082035388139223No Hit
AGAGTACCTCTGAGAG6801870.30445352356745603No Hit
TTCTAGTACCCGCTAG6731700.30131269556740187No Hit
GTCTACAGAAGCCATT6687040.2993137020020261No Hit
GGGGGGGGGGGGGGGG6356630.2845244618780715No Hit
CGATATTCTACTAGTC6336150.2836077715910384No Hit
CTTATTGTGCGATTCA6333080.2834703575685193No Hit
TTCCGGACTTAGGCGA6312050.2825290491341294No Hit
CATTACTTGCAAGTTC6209830.27795365454719No Hit
CACTCTGACGGTGCAA6199540.2774930713902774No Hit
TGGACTATGTCGACAT6123470.2740881578094862No Hit
CACTCTGACATCATGC5719100.2559884482700548No Hit
GGTGTAACTGAATAAC5507960.24653776530110175No Hit
TACAACCGAGGCAGTA5282940.2364658098133978No Hit
GTGTACTGAACAACAA5161070.23101087596180025No Hit
GTTGTTGGAAGAGGCT4886450.2187188111851881No Hit
AACCACTGAGACAAAT4881900.21851515196614513No Hit
ACTCTAACTGCTGTTA4879520.21840862252849189No Hit
AGGGACCCTAGCCTAT4828130.21610839236000412No Hit
GTTACCCTGACCGTGC4627520.20712903501226487No Hit
TAGCATTCTGTCGGTC4620760.20682645560111532No Hit
TATGGTTCTGGGTAGT4463300.1997785038141903No Hit
GTGCATAACGAAGTTA4365800.19541437769184056No Hit
ATGTGTGTGGTTAGAA4350810.19474342127569672No Hit
GTTGTGATGCTCGATA4102430.1836258659293457No Hit
TCGGGTTCTAGTGAGC4097660.18341235945135995No Hit
AGGGAGTTGCGAACAG4074440.1823730260302219No Hit
TCTATGGGAGTTTGGT3755120.16808017727751715No Hit
AAAGCATGATCCTACC3683750.16488563695595712No Hit
ATATTCGCTGGTTGAG3662860.16395059495907624No Hit
GGTCTAAACGTGAGCA3581410.16030487113686714No Hit
CTCTGGACTCGAACAG3554670.1591079815726453No Hit
AAGCCTAACTGCGCCA3545300.15868857786222051No Hit
AGGTGATCTCCTCGTT3538030.15836317071443096No Hit
GAGTCATTGCAGGGAT3524960.1577781540126965No Hit
CGACGACACTGTGCTA3504280.15685251167207911No Hit
TTGTGGTGAACGTAAA3466940.15518116326788897No Hit
ACGGAATCTCCTAGGC3466270.15515117388838154No Hit
AACGAACCTTCTGCAA3418150.15299730979599724No Hit
CGTGTCTTGACACCGC3353820.15011788176060487No Hit
CAACGCGTGTTCTGAG3344350.1496940020233879No Hit
TCCGTTGACTGCTACA3332960.14918418257176164No Hit
GCGCAGTTGCCGCTAG3330420.1490704914912409No Hit
GAATCAGCTAGGGCTA3309420.14813052586488867No Hit
ATTGCTACTCTGTACA3255100.14569914811139084No Hit
CTAGTGCCTCATGCAT3240660.14505280984260388No Hit
GATACGACTACTCGAT3212700.14380131275151775No Hit
GCTGGACACAGTGGTG3204630.14344009738939095No Hit
GGAACTACTCCCGAGT3167190.14176427295840865No Hit
TATTCCTGATTGGGAG3153690.1411600093414679No Hit
AGTCGAACTTGTTGTG3134630.14030687863488345No Hit
TCAACAGACCTGGAAG3130530.14012336153640517No Hit
AACCCTCACCCAGCAC3072880.1375429320907286No Hit
CAAGATAGAGCTTTGA3035110.1358523367713322No Hit
CCTGCTATGGAAGGCT3007560.1346191913900939No Hit
CCATGATGACCAAGTT3006890.13458920201058647No Hit
GCTTGTCACTGGCATT3002990.1344146369656925No Hit
GGATTAAGAATTGCCA2996360.1341178763893727No Hit
ATACAGGCTTTTCTTG2957540.1323802827886587No Hit
TGTACCAGACTCCTAC2946640.13189239586831394No Hit
GGTAGCAGATGTGGGA2922310.130803378549783No Hit
GTGCATAACATCCGTA2912480.13036338511611428No Hit
CCTTACTCTAGGCATG2912270.13035398545985077No Hit
TCGCGGTGACCTAACA2897760.12970451397230928No Hit
TCGCCTCCTGTTCTCC2885620.12916112431974183No Hit
TTGTAACCTCGCACTG2864170.1282010165728249No Hit
GGTCAGAGAATCCTCC2857150.12788679949201573No Hit
TCCCACATGTTCAGTG2850790.12760212418803477No Hit
TGTCGAAACCTGTGCG2815220.12601000145806573No Hit
CCAGTTGCTTGGCAAG2808330.12570160321208634No Hit
ACGCAGAGATTCTGGA2774710.12419676300456431No Hit
CGCACTTACCGCACTG2699870.12084690455331658No Hit
ATGATGGCTGCACCCA2680180.11996557487794154No Hit
TCAATGGACGGAATTA2644310.11836002406759606No Hit
CACCGTTACGCACGCT2592790.11605397506427854No Hit
CGTGTCTTGTCTGTGA2554930.11435935132076921No Hit
AAACGACCTGCGTATT2548760.11408318046769333No Hit
CACCCATACCGACATT2540340.113706299011794No Hit
ACTACGCCTGGGTTCC2539260.11365795792243874No Hit
CCACATGCTGGTAGAC2513560.11250761903685527No Hit
GTAATCGTGCCTACGG2508000.11225875194721152No Hit
TCCGACACTAGCGCTC2507270.11222607695162881No Hit
AGCACATTGCATGCGC2494500.1116544883302708No Hit
AGTTCACGAGCGCACT2463060.11024722550681773No Hit
TTCTCTCTGTGCTACA2457050.10997821629660928No Hit
AGCTTGCCTCTTAGTG2450120.10966802763991304No Hit
TCCGAGCGAAGTCTAC2419180.10828314495042073No Hit
ACTGATTCTGCCCTTT2392310.10708043655136906No Hit
CAGTGTAACTTACGAC2387750.10687632972964686No Hit
GTTATGCGACCTCCTA2383250.10667490852399997No Hit
CTAACAGTGACCAGTT2382020.10661985339445645No Hit
CGACCTTACGATGGAC2378790.1064752777290699No Hit
TGCATGCCTCGGGTAA2377920.10643633629597817No Hit
TCGTTCGTGCGATTGT2373470.10623715310372733No Hit
GAAGCACGATAGCTTG2362510.1057465805673073No Hit
CTTCAGCACTGCAAGG2345970.10500624573588509No Hit
ACTGCTAGATAGCGAG2344350.10493373410185221No Hit
GAACGTTTGTTGCAGT2335330.10452999648519996No Hit
ACTACGCCTTACGATC2331980.10438004958766281No Hit
CTACAACGATCCTACC2307040.10326372850569972No Hit
ACCCTTTCTGGATGGT2296690.10280045973271182No Hit
TCACCCATGGATCCAT2293890.10267513098253152No Hit
TGCCGTTACAACGTGG2291610.10257307757167043No Hit
ATTAGCGTGGCCGCTA2290730.10253368853589946No Hit
TCGACTAGAAGCCATT2283300.10220111974524246No Hit
CAATCGTGAACAGGCA2271040.10165235886052443No Hit
GGGAGCTCTGCGGTAA2270340.10162102667297937No Hit
ATCTGTACTACCGTGC2260190.10116670995357577No Hit
TACTGGAACGCTCTTC2239450.10023838199688312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)