FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences225378041
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGACT6302094527.962327084030335No Hit
TCCTATGA5209762823.11566280762907No Hit
GATGCCTC4922598521.841517825598636No Hit
ATACTGAG4167374018.490594653806582No Hit
ATACGGAG155478196.898550955103919No Hit
ATCCTGAG4066340.18042307857312503No Hit
GATGCCTA3057370.1356551856797797Illumina PCR Primer Index 3 (100% over 8bp)
CGGAGACA2636960.117001638149832No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)