FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115706608
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGCGTT3371575629.139006477486575No Hit
CTATACGC3237785027.98271469508466No Hit
TACATAAG2926176725.28962477233798No Hit
GCTCGTCA1837972515.884766927053985No Hit
TACATCAG1915700.16556530634793132No Hit
AGGGCGTA1902150.1643942409927011No Hit
CGGGCGTT1193520.10315054780622383No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)