FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115706608
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAATCCACGCTGTTA6597480.570190425079266No Hit
TCCGCCTCTACAGATA5341480.46164001281586264No Hit
CCTGAGGACGGTAGAC5057050.43705801141452527No Hit
TTACTGGGAACGCGAA4826170.41710409486725253No Hit
GCTAGATACAGCGCTC4387820.37921948243439996No Hit
GGGTGAATGTCCGTAA4006050.34622482408264876No Hit
TGGGCCATGGTTTGGT3852980.3329956747154838No Hit
ATAGAACGATGCATGT3672740.3174183448537356No Hit
TCAATGGACGGTGTCC3627510.3135093200554285No Hit
GCTATCCTGGGTTGAG3355420.2899938091694815No Hit
GAGAAGAGACATGCGC3348480.2893940162864337No Hit
TTACTGGGAAGGTGAC3284070.28382735063843545No Hit
GGGGGGGGGGGGGGGG3239000.27993215391812365No Hit
TCCTTAAACCCCGCAA3186970.2754354358050147No Hit
ACCTGCTACTGTGCTA3164440.27348826957229616No Hit
TTCTCTCTGACACAAA2927580.25301752860994764No Hit
TCAGCCGGACTGATCA2566860.22184212676945814No Hit
CTTTCGTCTCGATGGA2555230.220836998350172No Hit
CACATATCTACAACAA2537670.21931936679018366No Hit
TGGACCCGACGATTCA2531130.21875414410212424No Hit
CTGCCTTGATCGGGCT2355000.2035320229938812No Hit
TTAGACCGAGAGTGAC2337920.20205587566787886No Hit
GGATTTGACCAGGTGA2300180.19879417777072853No Hit
AATTCTGCTCCTCAAA2282560.19727136068149193No Hit
GGACCTCGACCTCGTT2252040.19463365480388123No Hit
GGTTCCTTGAGTACGG2210350.19103057623122097No Hit
GCACTTCTGTGGCTTA2204540.19052844414901524No Hit
AAAGTCAGAAAGACAT2150510.18585887506096455No Hit
CTACCTGTGGCTTCGG2086780.18035097874444647No Hit
TGAGGTACTTCCAATG2084180.18012627247702223No Hit
CCATGATGACCAAGTT2076450.17945820345887245No Hit
ATGTCCAGACGGAATG2074080.1792533750535665No Hit
CTCTCTGGACTCGAGC2027750.17524928221904146No Hit
GTGTTGTGACCACATA2016270.17425711762287596No Hit
ATACAGGCTTAGACAA2006440.17340755508103736No Hit
AGAACATGAGTTCTCC2004870.1732718670657081No Hit
TGCGACGACCTCACGG1997490.17263404696817314No Hit
ACGATCATGATCCTTT1974990.17068947350007874No Hit
AAGATCAGACGAAAGC1949740.16850722994143946No Hit
CGACCTTTGAACGTAA1947490.16831277259463No Hit
TGCCATCTGTCCCAGG1924060.1662878234231877No Hit
CCCGACAGAGAATAAC1911040.1651625635763171No Hit
TCTTTCCACTTTCTTG1907980.16489810158465623No Hit
AGCCCAGTGGCCCTGA1904040.16455758516402105No Hit
CCGTTACTGAGCTTTG1899790.1641902768422699No Hit
CGATATTCTCAGACCC1881870.16264153210679202No Hit
CTGTTGCTGAAATGCA1878730.16237015607613353No Hit
CTTCTAAACTGCTACA1856720.16046793109689986No Hit
GTTGTTGGACGAGGAT1848940.15979554080437652No Hit
CCGAGTCGACCTAGGC1842800.15926488831130545No Hit
CAGTGGAGAGAATGTA1812930.15668335900055078No Hit
CGATACCCTGCACTTA1799310.15550624386119763No Hit
TATTCAGCTAAGACAT1785680.15432826446696976No Hit
CTGTTGCACTTAGCTG1785380.15430233682072853No Hit
AGACCATTGATTCTGG1784360.1542141828235082No Hit
TAGCGCGACTCTGCAA1779010.15375180646553913No Hit
AGTAAGTGATTGCAGT1769270.1529100222175729No Hit
TGAGCCCGAGTTTGGT1757310.1518763733874214No Hit
GCCAATTGAAGGTCCC1738560.15025589549734272No Hit
AACCACTGAAATCGAA1658920.14337296967516325No Hit
CAATGTGACGTACGTT1619710.1399842263114307No Hit
GGTATTTCTCGTGCAC1618940.13991767868607816No Hit
TACCCGTTGCACAGTT1611130.13924269562893074No Hit
TAAGGCTTGAGGTGCA1604800.13869562229324017No Hit
TGTCCGTTGGATGGAC1604310.13865327380437942No Hit
AGGTAGCGATAAAGCA1599130.13820558977928038No Hit
CCTTTCTACCGTTAGT1598030.1381105217430624No Hit
ACCTCCATGTTGTACG1579020.1364675732262413No Hit
AAATAGGTGAGACAAT1562940.13507785138770986No Hit
CGAATTTCTCGTACAT1540820.1331661196048544No Hit
CGGAATTTGATCATGC1539670.13306673029426289No Hit
ACGGGAATGAGGACAC1537960.13291894271068772No Hit
ACTCGGGACGAATAGT1530280.1322551949669115No Hit
TGTGTTACTAGGCATG1525520.13184380964655018No Hit
TCAAAGCACCCTACGG1514620.13090177183311777No Hit
CGGATAGGATCATTGG1511540.13063558133170752No Hit
ATGGACTACTAAGTAG1511050.1305932328428468No Hit
GGCACTGACCTTAAGC1504110.129993439959799No Hit
ATTACCTACCTCTGGG1503960.12998047613667837No Hit
GCCAATATGAGCTTGT1490580.12882410311431824No Hit
TACTGTTTGCGTTAGT1487640.1285700121811539No Hit
GTTTGAGACTGGGCCT1483650.12822517448614518No Hit
ATCAATCCTTGCCACG1481520.12804108819783222No Hit
TAGCTCGCTTCGACAT1468500.1269158283509616No Hit
TAAACGCACACACCTA1453080.1255831473341609No Hit
GTTGAGTTGCGTTCTC1432500.12380451080201056No Hit
ACTTCATACATGAATG1429800.12357116198583923No Hit
ATAGCCAACCATCTTT1419380.12267060840639282No Hit
GCGACGTTGCGAGTGA1415650.12234824133812651No Hit
TTCAAGTCTAACGTGG1409740.12183746670717371No Hit
TACAACGTGACTAGGG1407320.12162831702749423No Hit
ACCTCACACTGACTCA1402120.12117890449264575No Hit
AAGACCTACTGATGAA1372790.11864404494512536No Hit
GAAGAATACAGTACGG1366280.11808141502169005No Hit
AGCAACTTGAGCAAGC1351360.11679194674862475No Hit
GAGTTGTTGACCAGTT1350860.11674873400488933No Hit
CCCTATCGAGGTATGG1349930.11666835830154143No Hit
GAAGTGTCTGGACCTC1347670.11647303669985727No Hit
CGGATGAGAGCCGCTA1343510.11611350667197848No Hit
TGGTTAGACCTAACGT1338730.11570039284186777No Hit
AAGGCTTACGAATCTC1336200.11548173635856648No Hit
TGGCTAATGCGCTCGA1331850.11510578548806824No Hit
CAACCCTACCGCACTG1324910.11450599260502045No Hit
TAGAGAAACCCAAGTT1315960.11373248449215623No Hit
CGAGTCTCTTCATTGG1309810.11320096774421042No Hit
ACCGTGTCTTGGCTGC1296800.1120765721522145No Hit
TACGATGACACAGGCA1294420.11187087949203385No Hit
AGAGTACCTTTCTGGA1289040.11140591036944061No Hit
TCGGGTGACCGAGTTT1284000.11097032591258747No Hit
AACATCCGAAACCCGC1280830.11069635711730484No Hit
AAGGCGATGCGTACAT1261210.10900068905312651No Hit
TGTACGATGTACCAAC1260850.108969575877637No Hit
GTCGAAGGAAATCGAA1257410.10867227220073723No Hit
GTTATGCGATCCTACC1248470.10789962834274773No Hit
GCTTCCTGACTCCTAC1232670.10653410564070809No Hit
CTCAAACGAGTTAGGG1220840.10551169212392779No Hit
GAGATCACTTCGCTAA1216630.10514784082167547No Hit
CCTGCTATGCAAGGTG1213880.10491017073113058No Hit
CATGTCAGACCGTTAA1209850.10456187601662299No Hit
GTAGATAGATCTGTGA1208130.10441322417817313No Hit
AGCACATTGCTCACGG1197740.10351526336335086No Hit
GGATGCCTGTCTGGGC1197180.10346686509036718No Hit
ACTGGAACTTAGCGAG1193100.10311424910148606No Hit
AGTGGTACTCAGGGTA1186210.10251877749281181No Hit
CGGTCTACTGCTTACA1185220.10243321626021568No Hit
AAACATGGAGTGAGCA1172810.10136067596070227No Hit
TGAAAGAACCCTCGTT1171800.1012733862183567No Hit
AGATGGGTGTTGGTTG1167430.10089570683810903No Hit
CTTTCTGCTATCCTTT1166140.1007842179592716No Hit
CCTTACTCTGCGCTGT1163780.10058025380884038No Hit
CAAAGACCTCGGAAGT1160150.10026652928932114No Hit
AAATAGCGAGAAGGTC1157700.10005478684501753No Hit
GGTAGCCTGCGAACGA1157300.10002021665002918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)