FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116553473
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGCGTT3394760929.12620973550912No Hit
CTATACGC3266109128.02240907913572No Hit
TACATAAG2955511725.357560130361794No Hit
GCTCGTCA1851562815.885951334972232No Hit
AGGGCGTA1928060.1654227840984198No Hit
TACATCAG1660280.14244792173631754No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)