FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116553473
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAATCCACGCTGTTA6676900.5728615225391009No Hit
TCCGCCTCTACAGATA5379800.4615735474480456No Hit
CCTGAGGACGGTAGAC5099090.4374893230337289No Hit
TTACTGGGAACGCGAA4891870.41971035903837883No Hit
GCTAGATACAGCGCTC4494170.38558868168604465No Hit
GGGTGAATGTCCGTAA4114250.3529924844024167No Hit
TGGGCCATGGTTTGGT3864190.3315379542572704No Hit
ATAGAACGATGCATGT3691670.31673616452424375No Hit
TCAATGGACGGTGTCC3643030.31256297270524064No Hit
GCTATCCTGGGTTGAG3418110.2932653924435182No Hit
GAGAAGAGACATGCGC3392800.2910938569801348No Hit
TTACTGGGAAGGTGAC3319600.28481347784462846No Hit
GGGGGGGGGGGGGGGG3288290.28212715720620357No Hit
ACCTGCTACTGTGCTA3210550.2754572572882491No Hit
TCCTTAAACCCCGCAA3206550.27511406717155484No Hit
TTCTCTCTGACACAAA2936890.25197790545460624No Hit
TCAGCCGGACTGATCA2602380.22327777397075074No Hit
CTTTCGTCTCGATGGA2583440.22165276876820308No Hit
CACATATCTACAACAA2578110.2211954679377079No Hit
TGGACCCGACGATTCA2566850.22022938775921333No Hit
TTAGACCGAGAGTGAC2382120.2043800101949772No Hit
CTGCCTTGATCGGGCT2374140.203695345912172No Hit
GGATTTGACCAGGTGA2346960.201363369069234No Hit
AATTCTGCTCCTCAAA2303110.19760114741497237No Hit
GGACCTCGACCTCGTT2301500.19746301339300287No Hit
GCACTTCTGTGGCTTA2265130.19434255725695965No Hit
GGTTCCTTGAGTACGG2244330.1925579686501491No Hit
AAAGTCAGAAAGACAT2175130.1866207796313371No Hit
CTACCTGTGGCTTCGG2116810.1816170677299337No Hit
TGAGGTACTTCCAATG2099860.1801627996104415No Hit
CCATGATGACCAAGTT2097920.1799963524038447No Hit
ATGTCCAGACGGAATG2091110.1794120712301726No Hit
CTCTCTGGACTCGAGC2041570.17516166163491326No Hit
AGAACATGAGTTCTCC2041130.1751239107220769No Hit
ATACAGGCTTAGACAA2038060.174860512307514No Hit
GTGTTGTGACCACATA2036810.17475326539604702No Hit
TGCGACGACCTCACGG2016190.17298412034448774No Hit
ACGATCATGATCCTTT1997560.17138571237598385No Hit
CGACCTTTGAACGTAA1968640.1689044478322838No Hit
AAGATCAGACGAAAGC1965180.1686075883813432No Hit
TGCCATCTGTCCCAGG1946760.1670271978939658No Hit
CCGTTACTGAGCTTTG1944360.1668212838239492No Hit
CCCGACAGAGAATAAC1938270.16629877687128208No Hit
AGCCCAGTGGCCCTGA1922980.164986932650218No Hit
TCTTTCCACTTTCTTG1913430.16416756624661025No Hit
CGATATTCTCAGACCC1904570.16340740013813232No Hit
CTGTTGCTGAAATGCA1892540.16237525586217408No Hit
CTTCTAAACTGCTACA1870780.1605083016273569No Hit
CCGAGTCGACCTAGGC1866250.16011963882020058No Hit
GTTGTTGGACGAGGAT1858430.15944870214206314No Hit
CAGTGGAGAGAATGTA1834210.15737068598547896No Hit
CGATACCCTGCACTTA1821740.15630079079668435No Hit
AGACCATTGATTCTGG1819460.1561051724301686No Hit
CTGTTGCACTTAGCTG1812820.155535476836456No Hit
TAGCGCGACTCTGCAA1806540.1549966683532459No Hit
TATTCAGCTAAGACAT1804030.1547813165550202No Hit
AGTAAGTGATTGCAGT1785600.15320006809235104No Hit
TGAGCCCGAGTTTGGT1774890.15228117655490198No Hit
GCCAATTGAAGGTCCC1770980.15194570821583325No Hit
AACCACTGAAATCGAA1688690.14488542954013905No Hit
CAATGTGACGTACGTT1645370.1411686805763394No Hit
GGTATTTCTCGTGCAC1644070.14105714378841375No Hit
TGTCCGTTGGATGGAC1624130.1393463410566925No Hit
TACCCGTTGCACAGTT1622470.13920391715826433No Hit
TAAGGCTTGAGGTGCA1618590.13887102274507085No Hit
CCTTTCTACCGTTAGT1617520.13877921938885512No Hit
AGGTAGCGATAAAGCA1613940.13847206423441366No Hit
ACCTCCATGTTGTACG1599770.137256313246024No Hit
AAATAGGTGAGACAAT1580200.13557725560009695No Hit
CGGAATTTGATCATGC1555650.13347092625888549No Hit
ACTCGGGACGAATAGT1552190.13317406680794489No Hit
ACGGGAATGAGGACAC1548740.132878065332296No Hit
CGAATTTCTCGTACAT1547890.13280513743249847No Hit
TGTGTTACTAGGCATG1538740.13202009004056017No Hit
GGCACTGACCTTAAGC1537050.13187509221625685No Hit
TCAAAGCACCCTACGG1529730.1312470543027062No Hit
ATGGACTACTAAGTAG1528880.13117412640290865No Hit
CGGATAGGATCATTGG1526030.13092960344476393No Hit
GCCAATATGAGCTTGT1524070.13076144028758369No Hit
TACTGTTTGCGTTAGT1512830.12979707605967264No Hit
ATTACCTACCTCTGGG1506410.1292462559223782No Hit
GTTTGAGACTGGGCCT1506290.1292359602188774No Hit
ATCAATCCTTGCCACG1499700.12867055450162349No Hit
TAGCTCGCTTCGACAT1486160.12750885595661315No Hit
TAAACGCACACACCTA1467550.12591216393869276No Hit
GTTGAGTTGCGTTCTC1455640.12489031536623536No Hit
ATAGCCAACCATCTTT1447740.12421251488576406No Hit
ACTTCATACATGAATG1442960.12380240269631435No Hit
GCGACGTTGCGAGTGA1437220.12330992487885797No Hit
TTCAAGTCTAACGTGG1435500.12316235312867939No Hit
TACAACGTGACTAGGG1423490.12213192480330466No Hit
ACCTCACACTGACTCA1417410.12161027582592927No Hit
AAGACCTACTGATGAA1397940.11993979793291959No Hit
GAAGAATACAGTACGG1397000.11985914825549643No Hit
GAGTTGTTGACCAGTT1379280.11833881603854053No Hit
GAAGTGTCTGGACCTC1377890.11821955747298923No Hit
CCCTATCGAGGTATGG1367490.11732726316958397No Hit
AGCAACTTGAGCAAGC1363410.11697720925055576No Hit
CGGATGAGAGCCGCTA1356960.11642381518738613No Hit
AAGGCTTACGAATCTC1351160.11592618951817935No Hit
TGGCTAATGCGCTCGA1350220.11584553984075618No Hit
TGGTTAGACCTAACGT1348260.11567737668357597No Hit
CAACCCTACCGCACTG1344720.11537365343030147No Hit
CGAGTCTCTTCATTGG1340030.11497126301847738No Hit
TAGAGAAACCCAAGTT1327320.11388077642268112No Hit
TACGATGACACAGGCA1316410.11294472537939733No Hit
ACCGTGTCTTGGCTGC1309930.1123887573903525No Hit
AGAGTACCTTTCTGGA1301120.11163288115833322No Hit
TCGGGTGACCGAGTTT1295170.1111223858597504No Hit
AACATCCGAAACCCGC1288670.1105647019201221No Hit
TGTACGATGTACCAAC1279640.10978995023168464No Hit
AAGGCGATGCGTACAT1275650.10944761809028206No Hit
GTCGAAGGAAATCGAA1274050.10931034204360432No Hit
GTTATGCGATCCTACC1267140.10871748111701485No Hit
GCTTCCTGACTCCTAC1253240.10752489546150203No Hit
GAGATCACTTCGCTAA1245290.10684280510457203No Hit
CCTGCTATGCAAGGTG1236050.10605003593500814No Hit
CTCAAACGAGTTAGGG1230470.10557128572221952No Hit
CATGTCAGACCGTTAA1226480.10522895358081694No Hit
GTAGATAGATCTGTGA1214870.10423284426711163No Hit
AGCACATTGCTCACGG1212620.10403979982647107No Hit
GGATGCCTGTCTGGGC1206460.10351128704676178No Hit
ACTGGAACTTAGCGAG1197510.10274339916065821No Hit
CGGTCTACTGCTTACA1197220.10271851787719787No Hit
AGTGGTACTCAGGGTA1191000.1021848572457382No Hit
TGAAAGAACCCTCGTT1190810.1021685557151952No Hit
AAACATGGAGTGAGCA1185870.1017447159210777No Hit
AGATGGGTGTTGGTTG1185650.10172584046465952No Hit
CTTTCTGCTATCCTTT1181460.1013663488174222No Hit
CCTTACTCTGCGCTGT1179850.10122821479545273No Hit
AAATAGCGAGAAGGTC1172730.1006173363877368No Hit
GGTAGCCTGCGAACGA1172550.10060189283248556No Hit
CAAAGACCTCGGAAGT1171170.10048349224222601No Hit
ACGGCTTCTGTTTGGT1166700.10009997728682012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)