FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58089419
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGCGGACGGAATTA1781430.30667030771989645No Hit
GGGGGGGGGGGGGGGG1649080.2838864682051649No Hit
CAGATGACTAGCAGGT1491190.2567059587908772No Hit
CGTATCGCTATGTCAC1265940.21792953377619426No Hit
CGACCTACTCGAAGCA1022840.1760802599867628No Hit
TGGCGTTCTCAAGTTC1007570.17345155406012927No Hit
GCTATGATGGAAATCA971220.1671939600566499No Hit
CACTTTATGCCAAGTT951450.1637905863716764No Hit
GCCGTTTACGCGGTTC945370.16274392415596375No Hit
GTGCTAATGCCGGACT908270.15635721885942774No Hit
GGTATTTCTGCTAGAG868690.14954358555385103No Hit
CTTGCGTACCCTTCCA821490.1414181815108187No Hit
ACCTGCTTGAGGTAAT795240.13689928625383566No Hit
TGAGAATGAAATCGCT783660.13490580788904086No Hit
AACACTCGATCGACAT756000.1301441834011113No Hit
CGACGTTCTTCCCGTT752940.12961740932544014No Hit
ATTGTGCGAGTTAGAA728360.1253860018809966No Hit
CAGAAACCTTCGTCCT708450.12195852742131919No Hit
AACGTAGCTACGAGCA662380.11402765105982554No Hit
TGAAAGAACCCAAGTT661220.11382795892656457No Hit
TGCAATGACTCTGTAG624400.10748945517943638No Hit
TGTCCGTTGCCGGACT606090.1043374181449465No Hit
GTTCTCGACAATGCTC598810.10308417786034321No Hit
CCTCCCTTGTCATGTG591290.10178962196196177No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)