FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58425794
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCGCAC1604803927.467387092762486No Hit
CATGCGTA1440033724.64722516222886No Hit
GTGATAGT1420613924.314841147045428No Hit
TGATATCG1201864920.57079275636374No Hit
GGATATCG6631581.1350431968455577No Hit
CCTGCGTA3494160.598050922508644No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)