FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58425794
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGCGGACGGAATTA1808360.30951397939067804No Hit
GGGGGGGGGGGGGGGG1671710.2861253370386374No Hit
CAGATGACTAGCAGGT1523620.2607786554000447No Hit
CGTATCGCTATGTCAC1275940.21838642021707058No Hit
CGACCTACTCGAAGCA1038750.17778962490437014No Hit
TGGCGTTCTCAAGTTC1026020.17561079272624006No Hit
GCTATGATGGAAATCA999150.1710117966047667No Hit
CACTTTATGCCAAGTT966990.16550737847054334No Hit
GCCGTTTACGCGGTTC945850.16188911356514898No Hit
GTGCTAATGCCGGACT925840.15846425638648573No Hit
GGTATTTCTGCTAGAG886080.15165904292203544No Hit
CTTGCGTACCCTTCCA826150.141401587114075No Hit
ACCTGCTTGAGGTAAT808030.13830021719516555No Hit
TGAGAATGAAATCGCT793210.13576366630122305No Hit
AACACTCGATCGACAT767530.13136834734329841No Hit
CGACGTTCTTCCCGTT766550.13120061320861126No Hit
ATTGTGCGAGTTAGAA736780.12610526097428817No Hit
CAGAAACCTTCGTCCT716880.12269923109645714No Hit
AACGTAGCTACGAGCA676240.11574339922534899No Hit
TGAAAGAACCCAAGTT662750.11343448751419621No Hit
TGCAATGACTCTGTAG628660.10759973582900731No Hit
GTTCTCGACAATGCTC606750.10384967981778732No Hit
TGTCCGTTGCCGGACT603700.10332765011289363No Hit
CCTCCCTTGTCATGTG598270.10239826608090255No Hit
TGCTAAGACATCACAC590450.10105981614901118No Hit
GTCACAAACCTCCTAC587720.10059255677381124No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)