FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127745346
Sequences flagged as poor quality0
Sequence length10
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACGATCAAG12594077198.58736536671951No Hit
TACGTTCAAG4201500.32889652199149394No Hit
TACGATAAAG2770950.21691201180824232No Hit
AACGATCAAG1907990.14935886587993585No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)