FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122441965
Sequences flagged as poor quality0
Sequence length10
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAAGGAATC12015368998.13113420713233No Hit
TAAAGGAAAC4566070.3729170795323319No Hit
TAAAGTAATC2767140.22599604637184642No Hit
AAAAGGAATC2191830.17900970472010963No Hit
TAAAGGAATA2173430.17750695196699923No Hit
GAAAGGAATC1461860.11939207280771752No Hit
TATAGGAATC1303790.10648228325966509No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)