FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110993757
Sequences flagged as poor quality0
Sequence length10
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAGTGCTA10886157698.07900817340564No Hit
GTTAGTGCTA4473440.40303528062393634No Hit
CTTAGTTCTA3256740.29341650269573266No Hit
ATTAGTGCTA2330050.20992622134594469No Hit
CTTAGTGCAA1712900.1543239949973042No Hit
CTTAGTGATA1538470.13860869670354523No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)