FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006206573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106161581
Sequences flagged as poor quality0
Sequence length10
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAGTGCTA10414516998.10061984664678No Hit
GTTAGTGCTA5039220.47467454351494637No Hit
CTTAGTTCTA2601540.24505475290538484No Hit
ATTAGTGCTA2072590.19522976018979973No Hit
CTTAGTGCAA1721790.16218579111025108No Hit
CTTAGTGATA1649100.15533868132578016No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)