FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126108017
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGGGCGAG12395184198.29021496706272No Hit
CTAGGGCGAG5661400.4489326003754385No Hit
ATAGGGAGAG2419670.19187281328830982No Hit
AAAGGGCGAG1982270.1571882618691879No Hit
ATAGGGCGAA1504550.11930645138920866No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)