FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132557570
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGGCCGAA13088746398.740089306103No Hit
GTTGGCCGAA2585830.19507222409101194No Hit
TTTGGCAGAA2005370.15128294823147406No Hit
TTTGGCCGTA1895750.1430133337537796No Hit
ATTGGCCGAA1552710.1171347664263912No Hit
TTTGGACGAA1351360.10194513976078468No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)