FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106802820
Sequences flagged as poor quality0
Sequence length10
%GC69

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGAGGAAG10517630298.47708328300695No Hit
CCGGTGGAAG3777820.3537191246448362No Hit
CCGGAGGACG2454400.2298066661535716No Hit
CCGGAGGCAG2204680.20642526105584103No Hit
CCGGAGGAAA1851310.1733390560286704No Hit
CAGGAGGAAG1470870.1377182737309745No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)