FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101448266
Sequences flagged as poor quality0
Sequence length10
%GC69

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGAGGAAG9997709998.54983524311791No Hit
CCGGTGGAAG3652350.3600209391454754No Hit
CCGGAGGCAG2367450.2333652504223187No Hit
CCGGAGGACG1846770.18204056834248897No Hit
CCGGAGGAAA1805030.1779261559778656No Hit
CAGGAGGAAG1087230.1071708805747355No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)