FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93206278
Sequences flagged as poor quality0
Sequence length10
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTTACGTG9190072498.59928533998537No Hit
ACTTTACGTA2282260.2448611884276722No Hit
ACTATACGTG1879100.20160659134999467No Hit
AATTTACGTG1751350.18790043305881177No Hit
ACTTTAAGTG1579030.16941240803543298No Hit
CCTTTACGTG1372650.14727012272714074No Hit
ACTTAACGTG993900.10663444794995461No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)