FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006206617

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206617
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93206278
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGCGTTCA9193786398.63913136838272No Hit
ATGGCGTTCA2186230.2345582343712942No Hit
TGGGCGTTCA1240810.1331251527928194No Hit
AGGGAGTTCA1191360.12781971617834584No Hit
AGGGCGATCA964020.10342865531010689No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)