FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71742171
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGCGTTCA7097243298.92707595927087No Hit
AGGGCGTTAA1081040.15068403770496433No Hit
NGGGCGTTCA831880.11595411574595366No Hit
AGGGAGTTCA754010.10509996972352564No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)