FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54715619
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAGGATAT5370417598.15145287856471No Hit
GCGAGGATAT4273510.7810402364268235No Hit
GAGAGGAAAT1087360.19872936098922683No Hit
GAGCGGATAT997340.18227702038790788No Hit
GAGAGGATAA827450.1512273853650454No Hit
GTGAGGATAT643840.11767023964400365No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)