FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91239507
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGGAGGT8970575098.31897710714286No Hit
TAGCGGAGGT2200410.24116855431934764No Hit
AAGCGGAGTT1488790.1631738321426923No Hit
ACGCGGAGGT1163460.1275171291751938No Hit
AAGCGGAGGG1144450.12543360191545094No Hit
AAGAGGAGGT1116770.12239982839889743No Hit
CAGCGGAGGT1072420.11753899547045997No Hit
AAGCGGAGGA1036980.11365471319348536No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)