FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87048950
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCACAA8617216098.99276211832539No Hit
CCCACCAAAA2511350.28849859762811614No Hit
CCCACAACAA1410630.16205020278820134No Hit
CACACCACAA907120.10420803467474334No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)