FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87048950
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGGAGGT8587098998.64678321794807No Hit
TAGCGGAGGT1469730.16883948628903622No Hit
AAGCGGAGGG1032780.11864359076129007No Hit
AAGAGGAGGT1005490.11550857304999083No Hit
AAGCGGAGTT981260.11272508169254195No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)