FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37163538
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTTATCA3639737897.93840941624019No Hit
GTGCGTATCA2267650.6101814095310301No Hit
GGGCTTATCA902460.24283479145607717No Hit
GTGCTTATAA738220.19864093671598224No Hit
GTGCTAATCA603580.16241187800795498No Hit
GTGATTATCA539170.14508037420979672No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)