FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37100927
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTTATCA3639976698.11012538851118No Hit
GTGCGTATCA1960400.5283965007127719No Hit
GGGCTTATCA794770.21421836710441225No Hit
GTGCTTATAA623430.16803623262566997No Hit
GTGCTAATCA592610.15972916256243408No Hit
GTGATTATCA467780.12608310299093067No Hit
NTGCTTATCA415760.11206188998997249No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)