FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68921424
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTTATCA6781389598.39305554685No Hit
GTGCGTATCA2558810.3712648189044962No Hit
TTGCTTATCA1050670.15244461576998178No Hit
GGGCTTATCA895900.12998860847680685No Hit
GTGATTATCA725290.10523433178049252No Hit
GTGCTTATAA706030.10243984511985706No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)