FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61475072
Sequences flagged as poor quality0
Sequence length10
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCTCACGC6037165898.20510336287202No Hit
ACTCTCACGC2143420.34866490274301754No Hit
AATCTCAAGC833230.13553949151942432No Hit
AATATCACGC791900.1288164412397923No Hit
AATCTCACTC788260.12822433131920527No Hit
AATCTCCCGC784730.12765011483028438No Hit
AATCGCACGC751580.12225768519636708No Hit
AATCACACGC615670.10014953703510912No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)