FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95544224
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCTATGTC9185720896.1410372645865No Hit
GTGCTATGTC19077421.9967109681062456No Hit
GAGCGATGTC3548540.371402880408553No Hit
GAGCTATGTA1669820.1747693298550418No Hit
GAGCTAAGTC1527600.1598840762995783No Hit
TAGCTATGTC1480520.15495651521540435No Hit
GAGCTATGAC1192050.12476421389952363No Hit
GAGATATGTC1118560.11707248781464802No Hit
GAGCTATTTC1058090.11074348146885363No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)