FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91907418
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCTATGTC8886485696.68953598500613No Hit
GTGCTATGTC14975291.6293886093068133No Hit
GAGCGATGTC2692890.2930002886165293No Hit
GAGCTATGTA1372300.14931330134853749No Hit
GAGCTAAGTC1251410.1361598472932838No Hit
GAGCTATGAC1216470.13235819550495914No Hit
GAGCTATTTC1103910.12011108831280627No Hit
TAGCTATGTC1092460.11886526939533869No Hit
GAGATATGTC1009620.10985185113132001No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)