FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104707247
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCCATCAA10382384999.15631627675208No Hit
GTCCCATAAA3480920.3324430829510779No Hit
GTCCCAACAA1204970.11507990464117542No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)