FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104100006
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTAAACCG10162017397.61783587217084No Hit
TGGTAAACCG7576300.7277905440274423No Hit
TTTTAAACCG1908380.183321795389714No Hit
TGTTAAAACG1873250.17994715581476528No Hit
TGTTCAACCG1764150.16946684902208362No Hit
TGTAAAACCG1586690.15241977987974373No Hit
TGTTAAACAG1434580.13780786909848977No Hit
GGTTAAACCG1402090.1346868318143997No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)