FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99761176
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTAAACCG9757414697.80773434346844No Hit
TGGTAAACCG6559670.6575373570175235No Hit
TGTTAAAACG2076850.2081821890311317No Hit
TGTTCAACCG1829680.18340601758744304No Hit
TGTTAAACAG1340450.13436589801226884No Hit
TGTAAAACCG1223940.12268700601524585No Hit
TTTTAAACCG1139460.1142187818635979No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)