FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50566021
Sequences flagged as poor quality0
Sequence length10
%GC69

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGACGCACG4978052098.44658332914904No Hit
GAGACGCACA1812710.35848381267729174No Hit
GAGAAGCACG1062100.2100422336968139No Hit
GAGACGCCCG723660.14311191303741302No Hit
GATACGCACG639590.12648612395268355No Hit
GAGACGCAAG565510.11183596985018852No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)