FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50566021
Sequences flagged as poor quality0
Sequence length10
%GC30

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTTCATAG4942210397.73777335574813No Hit
CTGTTCATAG3989210.7889111939418766No Hit
AGGTTCATAG1521750.30094319661814006No Hit
ATGTTAATAG1149800.22738589615346635No Hit
ATTTTCATAG729180.14420355518975875No Hit
AAGTTCATAG569370.1125993283117926No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)