FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50362236
Sequences flagged as poor quality0
Sequence length10
%GC69

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGACGCACG4960592098.49824777438397No Hit
GAGACGCACA1802020.3578117540293485No Hit
GAGAAGCACG947260.18808934535789873No Hit
GAGACGCCCG707350.14045246124496935No Hit
GATACGCACG626570.12441266507706289No Hit
GAGACGCAAG511590.10158206637211262No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)