FastQCFastQC Report
Fri 1 Jul 2022
EGAF00006206717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50362236
Sequences flagged as poor quality0
Sequence length10
%GC30

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTTCATAG4936978098.02936470096364No Hit
CTGTTCATAG3066220.6088331741267405No Hit
AGGTTCATAG1305200.25916244068273697No Hit
ATGTTAATAG959610.19054157960738677No Hit
ATTTTCATAG640290.12713692855098807No Hit
AAGTTCATAG610790.12127936495909356No Hit
NTGTTCATAG552710.10974691433478052No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)