FastQCFastQC Report
Fri 10 May 2024
EGAF00006206766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58915052
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA833610.14149355244564665No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC804010.13646936949151806No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG663030.1125400008133745No Hit
GCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTATACCCTTC658520.11177449185651232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)