FastQCFastQC Report
Thu 16 May 2024
EGAF00006206903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences308014952
Total Bases30.8 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTCATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGG3761210.12211127984462261No Hit
GTCATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAA3512520.1140373211492668No Hit
GCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTG3258860.10580200665063819No Hit
GATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATTTAAA3231710.10492055593457035No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)