FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006207017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006207017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences210225
Sequences flagged as poor quality0
Sequence length100
%GC67

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7110733.82423593768581No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT16240.7725056487097158No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCGCATATGTGTAGATC12230.5817576406231418Illumina Single End PCR Primer 1 (96% over 33bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG10470.49803781662504465No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG6140.29206802235699847No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCGCATATGTGTAGATA4120.195980497086455Illumina Single End PCR Primer 1 (96% over 33bp)
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3340.15887739326911643No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGT3210.1526935426328933No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTT3160.1503151385420383No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGG2550.12129860863360686No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)