FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006207018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006207018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences207174
Sequences flagged as poor quality0
Sequence length101
%GC58

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG76543.69447903694479No Hit
ATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9960.48075530713313447No Hit
GATTGACACTCTTTCCCTACACGACGCTCTTCCGATCAGATCGGAAGAGC6020.29057700290577004Illumina Single End PCR Primer 1 (96% over 32bp)
ACGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2950.14239238514485408No Hit
GATTGACACTCTTTCCCTACACGACGCTCTTCGATCAGATCGGAAGAGCA2720.13129060596406883Illumina Single End PCR Primer 1 (96% over 27bp)
TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2320.11198316391052932No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)