FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006207019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006207019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences207174
Sequences flagged as poor quality0
Sequence length101
%GC77

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10543650.89248650892486No Hit
GGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19670.9494434629828068No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT6380.3079537007539556No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCAATCAGGGTGTAGATC4210.20321082761350362Illumina Single End PCR Primer 1 (96% over 33bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG4180.20176276945948818No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGG3830.18486875766264105No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3370.1626651993010706No Hit
GGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3100.1496326759149314No Hit
GGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2830.13660015252879223No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG2660.12839448965603792No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCAAACAGGGTGTAGATC2270.10956973365383686Illumina Single End PCR Primer 1 (96% over 33bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)