FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006207021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006207021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418472
Sequences flagged as poor quality0
Sequence length101
%GC73

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17850242.65566154963773No Hit
GGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33820.808178324953641No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACTCCTACGTGTAGATC28260.6753139995029536Illumina Single End PCR Primer 1 (97% over 34bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT12320.29440440459576744No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG9710.23203464031046284No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG6520.1558049284062016No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGG6490.15508803456384176No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGG6390.15269838842264238No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5890.1407501577166453No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACTCCTACCTGTAGATC4590.10968475788105296Illumina Single End PCR Primer 1 (97% over 34bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGG4350.1039496071421744No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGG4320.10323271329981457No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)