FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006207034

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006207034
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences244402
Sequences flagged as poor quality0
Sequence length101
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47541.9451559316208542No Hit
ATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14290.5846924329588138No Hit
ACGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6220.2544987356895606No Hit
GATTGACACTCTTTCCCTACACGACGCTCTTCCGATCAGATCGGAAGAGC4930.20171684356101832Illumina Single End PCR Primer 1 (96% over 32bp)
CTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4510.1845320414726557No Hit
TTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3080.12602188198132586No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)