FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006207053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006207053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences327960
Sequences flagged as poor quality0
Sequence length101
%GC74

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13560041.346505671423344No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT16610.5064642029515795No Hit
GGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGG12740.38846200756189775No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG10690.32595438468105864No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG7060.21527015489693863No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGAAGTGCTGTGTAGATC6800.20734235882424687Illumina Single End PCR Primer 1 (96% over 33bp)
GGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5000.15245761678253444No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4260.12989388949871936No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGG4020.1225759238931577No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGAAGTGCTGTGTATATC3830.11678253445542139Illumina Single End PCR Primer 1 (96% over 33bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGG3560.10854982314916453No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGG3300.10062202707647275No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)